ciftiTools-package	ciftiTools
.onAttach	dot-onAttach
add_surf	add_surf
all_integers	all_integers
apply_parc	apply_parc
apply_xifti	apply_xifti
area_original_Param	area_original_Param
area_target_Param	area_target_Param
as.cifti	as.xifti
as.matrix.xifti	as.matrix.xifti
as.metric_gifti	as.metric_gifti
as.surf_gifti	as.surf_gifti
as.xifti	as.xifti
assure_parc	assure_parc
as_cifti	as.xifti
as_xifti	as.xifti
boundary_mask_surf	boundary_mask_surf
brainstructures_Param_existing	brainstructures_Param_existing
check_cifti_type	check_cifti_type
ciftiTools	ciftiTools
ciftiTools.checkOption	ciftiTools.checkOption
ciftiTools.files	ciftiTools.files
ciftiTools.getOption	ciftiTools.getOption
ciftiTools.listOptions	ciftiTools.listOptions
ciftiTools.setOption	ciftiTools.setOption
ciftiTools_msg	ciftiTools_msg
ciftiTools_warn	ciftiTools_warn
cifti_component_suffix	cifti_component_suffix
cifti_fname_Param	cifti_fname_Param
combine_xifti	combine_xifti
confirm_wb_cmd_path	confirm_wb_cmd_path
convert_to_dlabel	convert_xifti
convert_to_dscalar	convert_xifti
convert_to_dtseries	convert_xifti
convert_xifti	convert_xifti
coordlist_to_vol	coordlist_to_vol
crop_image	crop_image
crop_vol	crop_vol
dilate_mask_surf	edit_mask_surf
dim.xifti	dim.xifti
dist_from_mask_surf	dist_from_mask_surf
edit_mask_surf	edit_mask_surf
erode_mask_surf	edit_mask_surf
even_vert_samp	even_vert_samp
expand_color_pal	expand_color_pal
expect_equal_xifti	expect_equal_xifti
faces_Param	faces_Param
fix_gifti_mwall	fix_gifti_mwall
fix_xifti	fix_xifti
flatten_xifti	flatten_xifti
format_path	format_path
get_cifti_extn	get_cifti_extn
get_data_meta_from_cifti_xml	get_data_meta_from_cifti_xml
get_intn_meta_from_cifti_xml	get_intn_meta_from_cifti_xml
get_kwargs	get_kwargs
get_misc_meta_from_cifti_xml	get_misc_meta_from_cifti_xml
get_wb_cmd_path	get_wb_cmd_path
header_cifti	header_cifti
idx_Param	idx_Param
impute_xifti	impute_xifti
infer_resolution	infer_resolution
infoCIfTI	info_cifti
infocii	info_cifti
info_cifti	info_cifti
is.3D_mask	is.3D_mask
is.cifti	is.cifti
is.fname	is.fname
is.nummat	is.nummat
is.subcort_labs	is.subcort_labs
is.surf	is.surf
is.xifti	is.xifti
is.xifti_data	is.xifti_data
is.xifti_meta	is.xifti_meta
isCIfTI	is.cifti
is_cifti	is.cifti
is_xifti	is.xifti
labels_Description	labels_Description
load_parc	load_parc
load_sub_parc	load_sub_parc
load_surf	load_surf
make_color_pal	make_color_pal
make_cortex	make_cortex
make_subcort	make_subcort
make_surf	read_surf
make_trans_mat	make_trans_mat
make_xifti	make_xifti
mask_Param_vertices	mask_Param_vertices
mask_surf	mask_surf
mask_with_boundary_surf	mask_with_boundary_surf
match_exactly	match_exactly
match_input	match_input
Math.xifti	S3_Math
merge_kwargs	merge_kwargs
merge_xifti	merge_xifti
move_from_mwall	move_from_mwall
move_from_submask	move_from_submask
move_to_mwall	move_to_mwall
move_to_submask	move_to_submask
ncol_xifti	ncol_xifti
newdata_xifti	newdata_xifti
nrow_xifti	nrow_xifti
Ops.xifti	S3_Ops
original_fnames_Param_remapped	original_fnames_Param_remapped
original_fnames_Param_resampled	original_fnames_Param_resampled
pad_vol	pad_vol
parc_add_subcortex	parc_add_subcortex
parc_borders	parc_borders
parc_mean_mat	parc_mean_mat
parc_vals_to_xifti	parc_vals_to_xifti
plot.surf	plot.surf
plot.xifti	plot.xifti
print.summary.surf	summary.surf
print.summary.xifti	summary.xifti
print.surf	summary.surf
print.xifti	summary.xifti
qform_from_Tfmat	qform_from_Tfmat
radial_order_surf	radial_order_surf
readCIfTI	read_cifti
readcii	read_cifti
read_cifti	read_cifti
read_cifti_convert	read_cifti_convert
read_cifti_flat	read_cifti_flat
read_cifti_separate	read_cifti_separate
read_dir_Param_separated	read_dir_Param_separated
read_surf	read_surf
read_xifti	read_cifti
read_xifti2	read_xifti2
remapCIfTI	remap_cifti
remapcii	remap_cifti
remap_cifti	remap_cifti
remap_cifti_wrapper	remap_cifti_wrapper
remap_gifti	remap_gifti
remap_xifti	remap_cifti
remove_xifti	remove_xifti
replace_NA_with_label	replace_NA_with_label
resampleCIfTI	resample_cifti
resamplecii	resample_cifti
resampleGIfTI	resample_gifti
resamplegii	resample_gifti
resample_cifti	resample_cifti
resample_cifti_components	resample_cifti_components
resample_cifti_default_fname	resample_cifti_default_fname
resample_cifti_from_template	resample_cifti_from_template
resample_cifti_wrapper	resample_cifti_wrapper
resample_gifti	resample_gifti
resample_surf	resample_surf
resample_xifti	resample_cifti
resamp_method_Param	resamp_method_Param
resamp_res_Param_optional	resamp_res_Param_optional
resamp_res_Param_required	resamp_res_Param_required
rgl_interactive_plots_Description	rgl_interactive_plots_Description
rgl_static_plots_Description	rgl_static_plots_Description
ROI_brainstructures_Param_all	ROI_brainstructures_Param_all
rotate_surf	rotate_surf
ROY_BIG_BL	ROY_BIG_BL
run_wb_cmd	run_wb_cmd
S3_Math	S3_Math
S3_Ops	S3_Ops
S3_Summary	S3_Summary
scale_xifti	scale_xifti
select_xifti	select_xifti
separateCIfTI	separate_cifti
separatecii	separate_cifti
separate_cifti	separate_cifti
separate_cifti_files	separate_cifti_files
separate_cifti_wrapper	separate_cifti_wrapper
set_names_xifti	set_names_xifti
smoothCIfTI	smooth_cifti
smoothcii	smooth_cifti
smoothGIfTI	smooth_gifti
smoothgii	smooth_gifti
smooth_cifti	smooth_cifti
smooth_gifti	smooth_gifti
smooth_xifti	smooth_cifti
substructure_table	substructure_table
summary.surf	summary.surf
Summary.xifti	S3_Summary
summary.xifti	summary.xifti
supported_intents	supported_intents
surface_plot_Params	surface_plot_Params
surfL_fname_Param	surfL_fname_Param
surfL_original_fname_Param	surfL_original_fname_Param
surfL_Param_optional	surfL_Param_optional
surfL_target_fname_Param	surfL_target_fname_Param
surfR_fname_Param	surfR_fname_Param
surfR_original_fname_Param	surfR_original_fname_Param
surfR_Param_optional	surfR_Param_optional
surfR_target_fname_Param	surfR_target_fname_Param
surf_area	surf_area
sys_path	sys_path
template_xifti	template_xifti
Tfmat_from_qform	Tfmat_from_qform
transform_xifti	transform_xifti
uncrop_vol	pad_vol
unmask_cortex	unmask_cortex
unmask_subcortex	unmask_subcortex
unvec_vol	unvec_vol
use_color_pal	use_color_pal
verbose_Param_FALSE	verbose_Param_FALSE
verbose_Param_TRUE	verbose_Param_TRUE
vertices_Param	vertices_Param
vert_adjacency	vert_adjacency
viewCIfTI	view_xifti
viewCIfTI_surface	view_xifti_surface
viewCIfTI_volume	view_xifti_volume
viewcii	view_xifti
viewcii_surface	view_xifti_surface
viewcii_volume	view_xifti_volume
view_cifti	view_xifti
view_cifti_surface	view_xifti_surface
view_cifti_volume	view_xifti_volume
view_comp	view_comp
view_surf	view_surf
view_xifti	view_xifti
view_xifti.cbar	view_xifti.cbar
view_xifti.cleg	view_xifti.cleg
view_xifti.title	view_xifti.title
view_xifti_surface	view_xifti_surface
view_xifti_surface.color	view_xifti_surface.color
view_xifti_surface.draw_mesh	view_xifti_surface.draw_mesh
view_xifti_surface.draw_title	view_xifti_surface.draw_title
view_xifti_surface.mesh_val	view_xifti_surface.mesh_val
view_xifti_surface.surf_hemi	view_xifti_surface.surf_hemi
view_xifti_volume	view_xifti_volume
vox_locations	vox_locations
wb_path_request	wb_path_request
welcome_msg	welcome_msg
writeCIfTI	write_cifti
writecii	write_cifti
write_cifti	write_cifti
write_cifti_from_separate	write_cifti_from_separate
write_dir_Param_generic	write_dir_Param_generic
write_label_table	write_label_table
write_metric_gifti	write_metric_gifti
write_spheres	write_spheres
write_subcort_nifti	write_subcort_nifti
write_surf	write_surf_gifti
write_surf_gifti	write_surf_gifti
write_xifti	write_cifti
write_xifti2	write_xifti2
xifti_Param	xifti_Param
xml_cifti	xml_cifti
x_Param_xifti	x_Param_xifti
