# Transition Network Analysis (TNA)

## Documentation for package ‘tna’ version 1.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

A B C D E F G H I M P R S T

tna-package | The 'tna' Package.

## -- A --

as.igraph.group_tna | Coerce a Specific Group from a 'group_tna' Object into an 'igraph' Object.
as.igraph.matrix | Coerce a Weight Matrix into an 'igraph' Object.
as.igraph.tna | Coerce a 'tna' Object into an 'igraph' Object.
atna | Build a Transition Network Analysis Model

## -- B --

betweenness_network | Build and Visualize a Network with Edge Betweenness
betweenness_network.tna | Build and Visualize a Network with Edge Betweenness
bootstrap | Bootstrap Transition Networks from Sequence Data
bootstrap.group_tna | Bootstrap Transition Networks from Sequence Data
bootstrap.tna | Bootstrap Transition Networks from Sequence Data
bootstrap_cliques | Bootstrap Cliques of Transition Networks from Sequence Data
bootstrap_cliques.tna | Bootstrap Cliques of Transition Networks from Sequence Data
build_model | Build a Transition Network Analysis Model
build_model.data.frame | Build a Transition Network Analysis Model
build_model.default | Build a Transition Network Analysis Model
build_model.matrix | Build a Transition Network Analysis Model
build_model.stslist | Build a Transition Network Analysis Model
build_model.tna_data | Build a Transition Network Analysis Model
build_model.tsn | Build a Transition Network Analysis Model
build_model.tsn_ews | Build a Transition Network Analysis Model

## -- C --

centralities | Calculate Centrality Measures for a Transition Matrix
centralities.group_tna | Calculate Centrality Measures for a Transition Matrix
centralities.matrix | Calculate Centrality Measures for a Transition Matrix
centralities.tna | Calculate Centrality Measures for a Transition Matrix
cliques | Identify Cliques in a Transition Network
cliques.group_tna | Identify Cliques in a Transition Network
cliques.tna | Identify Cliques in a Transition Network
cluster_sequences | Cluster Sequences via Dissimilarity Matrix based on String Distances
communities | Community Detection for Transition Networks
communities.group_tna | Community Detection for Transition Networks
communities.tna | Community Detection for Transition Networks
compare | Compare Two Matrices or TNA Models with Comprehensive Metrics
compare.group_tna | Compare Grouped TNA Models with Comprehensive Metrics
compare.matrix | Compare Two Matrices or TNA Models with Comprehensive Metrics
compare.tna | Compare Two Matrices or TNA Models with Comprehensive Metrics
compare_sequences | Compare Sequences Between Groups
compare_sequences.default | Compare Sequences Between Groups
compare_sequences.group_tna | Compare Sequences Between Groups
ctna | Build a Transition Network Analysis Model

## -- D --

deprune | Restore a Pruned Transition Network Analysis Model
deprune.group_tna | Restore a Pruned Transition Network Analysis Model
deprune.tna | Restore a Pruned Transition Network Analysis Model

## -- E --

engagement | Example Data on Student Engagement
engagement_mmm | Example Mixed Markov Model Fitted to the 'engagement' Data
estimate_centrality_stability | Estimate Centrality Stability
estimate_centrality_stability.group_tna | Estimate Centrality Stability
estimate_centrality_stability.tna | Estimate Centrality Stability
estimate_cs | Estimate Centrality Stability
estimate_cs.group_tna | Estimate Centrality Stability
estimate_cs.tna | Estimate Centrality Stability

## -- F --

ftna | Build a Transition Network Analysis Model

## -- G --

group_atna | Build a Grouped Transition Network Analysis Model
group_ctna | Build a Grouped Transition Network Analysis Model
group_ftna | Build a Grouped Transition Network Analysis Model
group_model | Build a Grouped Transition Network Analysis Model
group_model.default | Build a Grouped Transition Network Analysis Model
group_model.mhmm | Build a Grouped Transition Network Analysis Model
group_model.tna_clustering | Build a Grouped Transition Network Analysis Model
group_regulation | Example Wide Data on Group Regulation
group_regulation_long | Example Long Data on Group Regulation
group_tna | Build a Grouped Transition Network Analysis Model

## -- H --

hist.group_tna | Plot a Histogram of Edge Weights for a 'group_tna' Object.
hist.tna | Plot a Histogram of Edge Weights in the Network

## -- I --

import_data | Import Wide Format Sequence Data as Long Format Sequence Data
import_onehot | Import One-Hot Data and Create a Co-Occurrence Network Model

## -- M --

mmm_stats | Retrieve Statistics from a Mixture Markov Model (MMM)
mmm_stats.mhmm | Retrieve Statistics from a Mixture Markov Model (MMM)

## -- P --

permutation_test | Compare Two Networks from Sequence Data using a Permutation Test
permutation_test.group_tna | Compare Networks using a Permutation Test
permutation_test.tna | Compare Two Networks from Sequence Data using a Permutation Test
plot.group_tna | Plot a Grouped Transition Network Analysis Model
plot.group_tna_bootstrap | Plot a Bootstrapped Grouped Transition Network Analysis Model
plot.group_tna_centralities | Plot Centrality Measures
plot.group_tna_cliques | Plot Found Cliques
plot.group_tna_communities | Plot Detected Communities
plot.group_tna_permutation | Plot Permutation Test Results
plot.group_tna_stability | Plot Centrality Stability Results
plot.tna | Plot a Transition Network Analysis Model
plot.tna_bootstrap | Plot a Bootstrapped Transition Network Analysis Model
plot.tna_centralities | Plot Centrality Measures
plot.tna_cliques | Plot Cliques of a TNA Network
plot.tna_communities | Plot Communities
plot.tna_comparison | Plot the Comparison of Two TNA Models or Matrices
plot.tna_permutation | Plot the Significant Differences from a Permutation Test
plot.tna_sequence_comparison | Plot a Sequence Comparison
plot.tna_stability | Plot Centrality Stability Results
plot_associations | Plot an Association Network
plot_associations.tna | Plot an Association Network
plot_compare | Plot the Difference Network Between Two Models
plot_compare.group_tna | Plot the Difference Network Between Two Groups
plot_compare.tna | Plot the Difference Network Between Two Models
plot_frequencies | Plot the Frequency Distribution of States
plot_frequencies.group_tna | Plot the Frequency Distribution of States
plot_frequencies.tna | Plot the Frequency Distribution of States
plot_mosaic | Create a Mosaic Plot of Transitions or Events
plot_mosaic.group_tna | Plot State Frequencies as a Mosaic Between Two Groups
plot_mosaic.tna | Create a Mosaic Plot of Transitions or Events
plot_mosaic.tna_data | Plot State Frequencies as a Mosaic Between Two Groups
plot_sequences | Create a Sequence Index Plot or a Distribution Plot
plot_sequences.default | Create a Sequence Index Plot or a Distribution Plot
plot_sequences.group_tna | Create a Sequence Index Plot or a Distribution Plot
plot_sequences.tna | Create a Sequence Index Plot or a Distribution Plot
plot_sequences.tna_data | Create a Sequence Index Plot or a Distribution Plot
prepare_data | Compute User Sessions from Event Data
print.group_tna | Print a 'group_tna' Object
print.group_tna_bootstrap | Print 'group_tna' Bootstrap Results
print.group_tna_centralities | Print Centrality Measures
print.group_tna_cliques | Print Found Cliques
print.group_tna_communities | Print Detected Communities
print.group_tna_permutation | Print Permutation Test Results
print.group_tna_stability | Print Centrality Stability Results
print.summary.group_tna | Print a Summary of a Grouped Transition Network Analysis Model
print.summary.group_tna_bootstrap | Print a Bootstrap Summary for a Grouped Transition Network Model
print.summary.tna | Print a TNA Summary
print.summary.tna_bootstrap | Print a Bootstrap Summary
print.tna | Print a 'tna' Object
print.tna_bootstrap | Print Bootstrap Results
print.tna_centralities | Print Centrality Measures
print.tna_cliques | Print Found Cliques of a TNA Network
print.tna_clustering | Cluster Sequences via Dissimilarity Matrix based on String Distances
print.tna_communities | Print Detected Communities
print.tna_comparison | Print Comparison Results
print.tna_data | Print a TNA Data Object
print.tna_permutation | Print Permutation Test Results
print.tna_sequence_comparison | Print a Comparison of Sequences
print.tna_stability | Print Centrality Stability Results
prune | Prune a Transition Network based on Transition Probabilities
prune.group_tna | Prune a Transition Network based on Transition Probabilities
prune.tna | Prune a Transition Network based on Transition Probabilities
pruning_details | Print Detailed Information on the Pruning Results
pruning_details.group_tna | Print Detailed Information on the Pruning Results
pruning_details.tna | Print Detailed Information on the Pruning Results

## -- R --

rename_groups | Rename Groups
reprune | Restore Previous Pruning of a Transition Network Analysis Model
reprune.group_tna | Restore Previous Pruning of a Transition Network Analysis Model
reprune.tna | Restore a Pruned Transition Network Analysis Model

## -- S --

simulate.tna | Simulate Data from a Transition Network Analysis Model
sna | Build a Social Network Analysis Model
summary.group_tna | Calculate Summary of Network Metrics for a grouped Transition Network
summary.group_tna_bootstrap | Summarize Bootstrap Results for a Grouped Transition Network
summary.tna | Calculate Summary of Network Metrics for a Transition Network
summary.tna_bootstrap | Summarize Bootstrap Results

## -- T --

tna | Build a Transition Network Analysis Model
tsn | Build a Transition Network Analysis Model