# Characterise Tables of an OMOP Common Data Model Instance

## Documentation for package ‘OmopSketch’ version 0.5.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

databaseCharacteristics | Summarise Database Characteristics for OMOP CDM
mockOmopSketch | Creates a mock database to test OmopSketch package.
plotConceptSetCounts | Plot the concept counts of a summariseConceptSetCounts output.
plotInObservation | Create a ggplot2 plot from the output of summariseInObservation().
plotObservationPeriod | Create a plot from the output of summariseObservationPeriod().
plotRecordCount | Create a ggplot of the records' count trend.
shinyCharacteristics | Generate an interactive Shiny application that visualises the results obtained from the 'databaseCharacteristics()' function.
summariseClinicalRecords | Summarise an omop table from a cdm object. You will obtain information related to the number of records, number of subjects, whether the records are in observation, number of present domains and number of present concepts.
summariseConceptCounts | Summarise concept counts in patient-level data. Only concepts recorded during observation period are counted.
summariseConceptIdCounts | Summarise concept use in patient-level data. Only concepts recorded during observation period are counted.
summariseConceptSetCounts | Summarise concept counts in patient-level data. Only concepts recorded during observation period are counted.
summariseInObservation | Summarise the number of people in observation during a specific interval of time.
summariseMissingData | Summarise missing data in omop tables
summariseObservationPeriod | Summarise the observation period table getting some overall statistics in a summarised_result object.
summariseOmopSnapshot | Summarise a cdm_reference object creating a snapshot with the metadata of the cdm_reference object.
summariseRecordCount | Summarise record counts of an omop_table using a specific time interval. Only records that fall within the observation period are considered.
tableClinicalRecords | Create a visual table from a summariseClinicalRecord() output.
tableConceptIdCounts | Create a visual table from a summariseConceptIdCounts() result.
tableInObservation | Create a visual table from a summariseInObservation() result.
tableMissingData | Create a visual table from a summariseMissingData() result.
tableObservationPeriod | Create a visual table from a summariseObservationPeriod() result.
tableOmopSnapshot | Create a visual table from a summarise_omop_snapshot result.
tableRecordCount | Create a visual table from a summariseRecordCount() result.
tableTopConceptCounts | Create a visual table of the most common concepts from 'summariseConceptIdCounts()' output. This function takes a 'summarised_result' object and generates a formatted table highlighting the most frequent concepts.