# Multivariate and Functional Spatial Scan Statistics

## Documentation for package ‘HDSpatialScan’ version 1.0.4

- DESCRIPTION file.

## Help Pages

HDSpatialScan-package | Multivariate and Functional Spatial Scan Statistics
clusters | Creation of the matrix of potential clusters
DFFSS | DFFSS scan procedure
dfree | Index for the UG scan procedure
dfree_index_multi | Index for the MDFFSS scan procedure
FinScan | Finalization of the scan procedures
fmulti_data | Multivariate functional data
funi_data | Univariate functional data
HDSpatialScan | Multivariate and Functional Spatial Scan Statistics
InitScan | Initalization of the scan procedures by creating the matrix of potential clusters
map_sites | Spatial object corresponding to the sites of the data of the package HDSpatialScan
MDFFSS | MDFFSS scan procedure
MG | MG scan procedure
MNP | MNP scan procedure
MPFSS | MPFSS scan procedure
MRBFSS | MRBFSS scan procedure
multi_data | Multivariate non-functional data
multi_fWMW | Index for the NPFSS scan procedure (multivariate functional case)
multi_gaussian | Index for the MG scan procedure
multi_signs_matrix | List of matrix of signs (multivariate functional data)
multi_WMW | Index for the MNP scan procedure
non_overlap | Return only the detected clusters with no overlapping in their order of detection
NPFSS | NPFSS scan procedure (univariate functional or multivariate functional)
permutate | Permutates the data
PFSS | PFSS scan procedure
plot.ResScanOutput | Schema or map of the clusters
plotCurves | Generic function to plot curves
plotCurves.ResScanOutputMultiFunct | Plots the curves in the clusters detected by the multivariate functional scan functions (MPFSS, NPFSS, MDFFSS or MRBFSS)
plotCurves.ResScanOutputUniFunct | Plots the curves in the clusters detected by the univariate functional scan functions (PFSS, NPFSS, DFFSS or URBFSS)
plotSummary | Generic function to plot a summary
plotSummary.ResScanOutputMulti | Plots the mean or median spider chart of the clusters detected by a multivariate scan function (MG or MNP)
plotSummary.ResScanOutputMultiFunct | Plots the mean or median curves in the clusters detected by a multivariate functional scan procedure (MPFSS, NPFSS, MDFFSS or MRBFSS)
plotSummary.ResScanOutputUniFunct | Plots the mean or median curves in the clusters detected by a univariate functional scan procedure (PFSS, NPFSS, DFFSS or URBFSS)
plot_map | Map of circular clusters
plot_map2 | Map of the clusters
plot_schema | Schema of the clusters
pointwise_dfree | Index for the DFFSS scan procedure
pointwise_wmw_multi | Index for the MRBFSS scan procedure
pointwise_wmw_uni | Index for the URBFSS scan procedure
post_filt_area | A posteriori filtering on the area
post_filt_nb_sites | A posteriori filtering on the number of sites/individuals
post_filt_radius | A posteriori filtering on the radius
print.ResScanOutput | Prints a result of a scan procedure
ResScanOutput | Constructor function for objects of the ResScanOutput class
ResScanOutputMulti | Constructor function for objects of the ResScanOutputMulti class
ResScanOutputMultiFunct | Constructor function for objects of the ResScanOutputMultiFunct class
ResScanOutputUni | Constructor function for objects of the ResScanOutputUni class
ResScanOutputUniFunct | Constructor function for objects of the ResScanOutputUniFunct class
SpatialScan | Spatial scan procedure
summary.ResScanOutputMulti | Summary of the clusters obtained with a multivariate scan function (MG or MNP).
summary.ResScanOutputMultiFunct | Summary of the clusters obtained with a multivariate functional scan function (MPFSS, NPFSS, MDFFSS or MRBFSS).
summary.ResScanOutputUni | Summary of the clusters obtained with a univariate scan function (UG or UNP).
summary.ResScanOutputUniFunct | Summary of the clusters obtained with a univariate functional scan function (PFSS, NPFSS, DFFSS or URBFSS).
transform_data | Computation of the multivariate functional ranks
UG | UG scan procedure
uni_fWMW | Index for the NPFSS scan procedure (univariate functional case)
uni_signs_matrix | Computation of the matrix of signs
UNP | UNP scan procedure
URBFSS | URBFSS scan procedure
wmw_uni | Index for the UNP scan procedure