# Single Cell Poisson Probability Paradigm

## Documentation for package ‘scpoisson’ version 0.0.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

adj_CDF_logit | A novel data representation based on Poisson probability
adj_CDF_logit.matrix | A novel data representation based on Poisson probability
adj_CDF_logit.scppp | A novel data representation based on Poisson probability
cluster_size | Cluster size
clust_clean | Cluster label clean
diff_gene_list | Differential expression analysis
diff_gene_list.matrix | Differential expression analysis
diff_gene_list.scppp | Differential expression analysis
fwer_cutoff-shc | get FWER cutoffs for shc object
fwer_cutoff.shc | get FWER cutoffs for shc object
get_example_data | get example data
HclustDepart | Cluster cells in a recursive way
HclustDepart.matrix | Cluster cells in a recursive way
HclustDepart.scppp | Cluster cells in a recursive way
interpolate | Linear interpolation for one sample given reference sample
logit | Logit transformation
LouvainDepart | Louvain clustering using departure as data representation
LouvainDepart.matrix | Louvain clustering using departure as data representation
LouvainDepart.scppp | Louvain clustering using departure as data representation
nboot_small | Random sample generation function to generate sets of samples from theoretical Poisson distribution.
new_quantile | A more "continuous" approximation of quantiles of samples with a few integer case
new_quantile_pois | A more "continuous" approximation of quantiles from the theoretical Poisson distribution.
new_scppp | Generate New scppp object
para_est_new | Parameter estimates based on two-way approximation
print.scppp | Print scppp objects
qqplot_env_pois | Q-Q plot comparing samples with a theoretical Poisson distribution
qqplot_env_pois.scppp | Q-Q plot comparing samples with a theoretical Poisson distribution
qqplot_small_test | Q-Q plot comparing two samples with small discrete counts
qq_interpolation | Paired quantile after interpolation between two samples
scppp | Generate New scppp object
sigp | Significance for first split using sigclust2
theme_dirk | Dirk theme ggplots