# Gene Cluster Visualizations

## Documentation for package ‘geneviewer’ version 0.1.11

- DESCRIPTION file.
- Package NEWS.

## Help Pages

BRCA1_splice_variants | BRCA1 Splice Variants
erythromycin_BlastP | Erythromycin BlastP results
erythromycin_cluster | Erythromycin Gene Cluster Data
gbk_features_to_df | Convert GenBank Features to Data Frame
GC_align | Align gene clusters
GC_annotation | Add Annotations to a GC_chart
GC_chart | Create a GC Chart Visualization
GC_chartOutput | Shiny bindings for geneviewer
GC_cluster | Modify Cluster Settings
GC_clusterFooter | Add a Footer to Each Cluster in a GC Chart
GC_clusterLabel | Set or Update Cluster Labels for a GC Chart
GC_clusterTitle | Update cluster Title of a GC Chart Cluster
GC_color | Update Color Scheme in Gene Chart
GC_coordinates | Modify Coordinates in a GC Chart
GC_genes | Modify Gene Characteristics within a Chart
GC_grid | Update Grid Display of a GC Chart Cluster
GC_labels | Add Labels to Each Cluster in a GC Chart
GC_legend | Set Legend for a Gene Chart
GC_links | Add Links to GC Chart
GC_normalize | Normalize Gene Clusters in a Genomic Chart
GC_scale | Update Scale of a GC Chart Cluster
GC_scaleBar | Update Scale Bar of a GC Chart Cluster
GC_sequence | Update Sequence Display of a GC Chart Cluster
GC_title | Add Title to a GC_chart
GC_tooltip | Set Tooltip for a Gene Chart
GC_trackMouse | Track Mouse Movement in a GC_chart
GC_transcript | Modify Transcript Characteristics within a Chart
genbank_to_fasta | Convert GenBank to FASTA Format
geneviewer-shiny | Shiny bindings for geneviewer
get_introns | Calculate Intron Positions Based on Exons
hs_dystrophin_transcripts | Human Dystrophin Transcripts Data
human_hox_genes | Human HOX Gene Cluster Data
mummer_alignment | Perform Sequence Alignment Using MUMmer
ophA_clusters | ophA Gene Cluster from Omphalotus olearius
protein_blast | Perform Protein BLAST Analysis Within Specified Clusters
read_bed | Read BED Files
read_fasta | Read Protein Sequences from FASTA Files
read_gbk | Read Data from GenBank Files
read_gff | Read GFF Files
renderGC_chart | Shiny bindings for geneviewer