# Web Application for the SSD Module of the MOSAIC Platform

## Documentation for package ‘ssd4mosaic’ version 1.0.4-2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

add_CI_plot | Add confidence interval(s) to an existing fitted distribution ggplot
base_cdf | Graphical representation of fitted distribution(s)
bootdist_fun | Determines the appropriate bootstrap function based on a fit object
cens_lines_plot | Graphical representation of censored data
code_r_ssd | Generate a script according to user in-app inputs
combine_boot_samples | Combine several bootstrap samples into a single 'bootdist' or 'bootdistcens' object
custom_theme | Custom ggplot theme created for MOSAIC bioacc overwriting 'theme_bw'
endosulfan | Summary of 48 to 96-hour acute toxicity values for endosulfan
fluazinam | 48-hour acute toxicity values for fluazinam
get_bootstrap | Generate bootstrap sample(s) for a list of fit(s) and check their convergence
get_custom_HCx | Get HCx values for a given x from a bootstrap
get_fits | Fit the specified distributions to the given data
get_HCx_table | Get HCx values from fit or bootstrap
get_parameters_html | Get fit(s) parameters in HTML format for shiny outputs
get_xlab | Create a label for x axis based on concentration unit and log scale
group_cdf_censored | Graphical representation of grouped toxicity censored data
group_cdf_uncensored | Graphical representation of grouped toxicity uncensored data
my_CIcdfplot | Create a pretty confidence interval ggplot
name_plot_censored | Graphical representation of named toxicity censored data
name_plot_uncensored | Graphical representation of named toxicity uncensored data
options_plot | Graphical representation of toxicity data with additional elements
order_cens_data | Take a data.frame of censored toxicity data and order them like 'fitdistrplus' plots
run_app | Run the Shiny Application
salinity_family | 72-hour acute salinity tolerance of macro-invertebrates grouped by family.
salinity_order | 72-hour acute salinity tolerance of macro-invertebrates grouped by order.
switchInput | Custom toggle switch input for shiny UI
test_conv | Test the approximate equality of the quantiles from several bootstrap samples