# Handling Vegetation Data Sets

## Documentation for package ‘vegtable’ version 0.1.10

- DESCRIPTION file.
- Package NEWS.

## Help Pages

A B C D E H K L M N P R S T U V W misc

## -- A --

add_releves | Merge relevés from data frames into vegtable objects
add_releves-method | Merge relevés from data frames into vegtable objects
add_releves<- | Merge relevés from data frames into vegtable objects
add_releves<--method | Merge relevés from data frames into vegtable objects
as | Coerce objects to lists
as.list-method | Coerce objects to lists
aspect_conv | Conversion of aspect classes to azimuth
aspect_conv-data | Conversion of aspect classes to azimuth

## -- B --

braun_blanquet | Conversion of Braun-Blanquet codes to cover percentage
braun_blanquet-data | Conversion of Braun-Blanquet codes to cover percentage

## -- C --

clean | Clean orphaned records in vegtable object
clean-method | Clean orphaned records in vegtable object
clean_once | Clean orphaned records in vegtable object
coerce-method | Coerce objects to lists
count_taxa | Count taxa included in vegtable objects
count_taxa-method | Count taxa included in vegtable objects
count_taxa<- | Count taxa included in vegtable objects
count_taxa<--method | Count taxa included in vegtable objects
coverconvert | Cover conversion tables
coverconvert-class | Cover conversion tables
cover_trans | Convert cover scales to percent cover
cover_trans-method | Convert cover scales to percent cover
cross2db | Generating cross tables from database lists
cross2db-method | Generating cross tables from database lists
cross2db.data.frame | Generating cross tables from database lists
cross2db.matrix | Generating cross tables from database lists
crosstable | Generating cross tables from database lists
crosstable-method | Generating cross tables from database lists

## -- D --

df2coverconvert | Create coverconvert objects
df2coverconvert-method | Create coverconvert objects
df2coverconvert.data.frame | Create coverconvert objects
df2coverconvert.list | Create coverconvert objects
df2vegtable | Convert a data frame into a vegtable object.
df2vegtable-method | Convert a data frame into a vegtable object.
dimnames | Retrieve names of vegtable and coverconvert objects
dimnames-method | Retrieve names of vegtable and coverconvert objects
dominance | Calculation of statistics at plot level
dune_veg | Dutch dune meadows as vegtable
dune_veg-data | Dutch dune meadows as vegtable

## -- E --

evenness | Calculation of statistics at plot level
Extract | Select or replace elements in objects

## -- H --

header | Retrieve or replace slot header in vegtable objects
header-method | Retrieve or replace slot header in vegtable objects
header<- | Retrieve or replace slot header in vegtable objects
header<--method | Retrieve or replace slot header in vegtable objects

## -- K --

Kenya_veg | Vegetation-plots from Kenya
Kenya_veg-data | Vegetation-plots from Kenya

## -- L --

layers2samples | Add information from slot 'layers' into slot 'samples'
layers2samples-method | Add information from slot 'layers' into slot 'samples'

## -- M --

make_cocktail | Produce a Cocktail classification
make_cocktail-method | Produce a Cocktail classification

## -- N --

names | Retrieve names of vegtable and coverconvert objects
names-method | Retrieve names of vegtable and coverconvert objects
names<--method | Retrieve names of vegtable and coverconvert objects
new_layer | Insert new classification of vegetation layers
new_layer-method | Insert new classification of vegetation layers
new_layer<- | Insert new classification of vegetation layers
new_layer<--method | Insert new classification of vegetation layers
new_relation | Insert a new variable as relation in vegtable object
new_relation-method | Insert a new variable as relation in vegtable object
new_relation.vegtable | Insert a new variable as relation in vegtable object
new_relation<- | Insert a new variable as relation in vegtable object
new_relation<--method | Insert a new variable as relation in vegtable object

## -- P --

print-method | Summary method for vegtable objects

## -- R --

read_juice | Exporting tables for Juice
relation2header | Insert variables from relations into header
relation2header-method | Insert variables from relations into header
relation2header.vegtable | Insert variables from relations into header
richness | Calculation of statistics at plot level

## -- S --

set_formula | Produce a Cocktail classification
set_formula-method | Produce a Cocktail classification
set_group | Produce a Cocktail classification
set_group-method | Produce a Cocktail classification
set_pseudo | Produce a Cocktail classification
set_pseudo-method | Produce a Cocktail classification
shaker | Class containing Cocktail algorithms.
shaker-class | Class containing Cocktail algorithms.
shannon | Calculation of statistics at plot level
show-method | Summary method for vegtable objects
simpson | Calculation of statistics at plot level
subset | Subset functions for vegtable objects
subset-method | Subset functions for vegtable objects
summary | Summary method for vegtable objects
summary-method | Summary method for vegtable objects

## -- T --

taxa2samples | Insert taxon information into samples
taxa2samples-method | Insert taxon information into samples
taxa2samples.vegtable | Insert taxon information into samples
trait_proportion | Statistics and proportion for taxon traits
trait_proportion-method | Statistics and proportion for taxon traits
trait_stats | Statistics and proportion for taxon traits
trait_stats-method | Statistics and proportion for taxon traits
tv2coverconvert | Import of vegetation data from Turboveg databases
tv2vegtable | Import of vegetation data from Turboveg databases

## -- U --

update_det | Update by determined specimens
update_det-method | Update by determined specimens
used_concepts | Retrieve synonyms or taxon concepts used in a data set
used_concepts-method | Retrieve synonyms or taxon concepts used in a data set
used_concepts.vegtable | Retrieve synonyms or taxon concepts used in a data set
used_synonyms | Retrieve synonyms or taxon concepts used in a data set
used_synonyms-method | Retrieve synonyms or taxon concepts used in a data set
used_synonyms.vegtable | Retrieve synonyms or taxon concepts used in a data set

## -- V --

vegtable | Class vegtable.
vegtable-class | Class vegtable.
vegtable_stat | General statistics from vegtable objects
vegtable_stat-method | General statistics from vegtable objects
vegtable_stat.vegtable | General statistics from vegtable objects
veg_aggregate | Aggregating information into a data frame
veg_aggregate-method | Aggregating information into a data frame
veg_diversity | Calculation of statistics at plot level
veg_diversity-method | Calculation of statistics at plot level
veg_diversity.vegtable | Calculation of statistics at plot level
veg_diverstiy | Calculation of statistics at plot level
veg_layers | Information on vegetation layers
veg_layers-data | Information on vegetation layers
veg_relation | Retrieve or replace relations in vegtable objects
veg_relation-method | Retrieve or replace relations in vegtable objects
veg_relation<- | Retrieve or replace relations in vegtable objects
veg_relation<--method | Retrieve or replace relations in vegtable objects

## -- W --

Wetlands | Vegetation-plots from Tanzania
Wetlands-data | Vegetation-plots from Tanzania
Wetlands_veg | Vegetation-plots from Tanzania
write_juice | Exporting tables for Juice
write_juice-method | Exporting tables for Juice

## -- misc --

$ | Select or replace elements in objects
$-method | Select or replace elements in objects
$<- | Select or replace elements in objects
$<--method | Select or replace elements in objects
[ | Select or replace elements in objects
[-method | Select or replace elements in objects
[<- | Select or replace elements in objects
[<--method | Select or replace elements in objects